56 lines
1.6 KiB
RPMSpec
56 lines
1.6 KiB
RPMSpec
Name: bwa
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Version: 0.7.17
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Release: 1
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Summary: Burrows-Wheeler Alignment tool
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License: GPLv3 and MIT
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URL: https://github.com/lh3/bwa
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Source0: https://github.com/lh3/bwa/releases/download/v%{version}/%{name}-%{version}.tar.bz2
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Patch0: bwa-fix-build-gcc10.patch
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Patch1: bwa-simde.patch
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BuildRequires: gcc perl-generators
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%ifnarch x86_64
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BuildRequires: simde-devel
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%endif
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BuildRequires: zlib-devel
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%description
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BWA is a program for aligning sequencing reads against a large
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reference genome (e.g. human genome). It has two major components, one
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for read shorter than 150bp and the other for longer reads.
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%prep
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%autosetup -p1
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%build
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CFLAGS="%{optflags} -O3"
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%ifnarch x86_64
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CFLAGS="${CFLAGS} -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP"
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%endif
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%make_build CFLAGS="${CFLAGS}"
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%install
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rm -rf %{buildroot}
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mkdir -p %{buildroot}/%{_bindir}
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mkdir -p %{buildroot}/%{_datadir}/%{name}/bwakit
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mkdir -p %{buildroot}/%{_mandir}/man1
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install -m 0755 bwa %{buildroot}/%{_bindir}
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install -m 0755 qualfa2fq.pl %{buildroot}/%{_bindir}
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install -m 0755 xa2multi.pl %{buildroot}/%{_bindir}
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install -m 0755 bwakit/* %{buildroot}/%{_datadir}/%{name}/bwakit
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install -m 0644 bwa.1 %{buildroot}/%{_mandir}/man1/bwa.1
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%check
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./bwa 2>&1 | grep '^Version: %{version}'
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%files
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%doc COPYING NEWS.md README.md README-alt.md
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%{_bindir}/bwa
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%{_bindir}/qualfa2fq.pl
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%{_bindir}/xa2multi.pl
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%{_datadir}/%{name}/*
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%{_mandir}/man1/%{name}.1*
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%changelog
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* Fri Jan 8 2021 chengzihan <chengzihan2@huawei.com> - 0.7.17-1
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- Package init
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