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10 Commits

Author SHA1 Message Date
openeuler-ci-bot
bb7207a76f
!27 [sync] PR-25: fix separator spell error
From: @openeuler-sync-bot 
Reviewed-by: @reganhe_xx 
Signed-off-by: @reganhe_xx
2022-04-18 00:02:16 +00:00
herengui
12602b73fd fix separator spell error
Signed-off-by: herengui <herengui@uniontech.com>
(cherry picked from commit 07c5fb7310937cea1eb4da498440c9d725c8584d)
2022-04-12 17:57:30 +08:00
openeuler-ci-bot
58d731d912
!19 [sync] PR-18: 修复编译失败问题
From: @openeuler-sync-bot 
Reviewed-by: @reganhe_xx 
Signed-off-by: @reganhe_xx
2022-03-11 05:33:09 +00:00
herengui
d31346361b fix build issues
Signed-off-by: herengui <herengui@uniontech.com>
(cherry picked from commit 360728b76b81012d8d640013d4d9c741b6a169a4)
2022-03-11 10:05:53 +08:00
openeuler-ci-bot
b40cff7098
!13 [sync] PR-11: rebuild for htslib version updated
Merge pull request !13 from openeuler-sync-bot/sync-pr11-openEuler-20.03-LTS-SP3-to-openEuler-22.03-LTS-Next
2022-02-09 02:55:55 +00:00
herengui
acff68997a rebuild for htslib version updated
Signed-off-by: herengui <herengui@uniontech.com>
(cherry picked from commit f1b8816ab4722351bd23acd947fa5dff6014f4cd)
2022-02-09 09:59:09 +08:00
openeuler-ci-bot
78d2bc2297 !7 添加yaml文件到仓库
From: @xiangbudaomz
Reviewed-by: @yangzhao_kl
Signed-off-by: @yangzhao_kl
2021-07-21 07:49:59 +00:00
zouzhimin
64cd2a23db add yaml file 2021-07-21 15:27:05 +08:00
openeuler-ci-bot
7c4c11125f !4 移除多余的编译依赖
From: @reganhe_xx
Reviewed-by: @yangzhao_kl
Signed-off-by: @yangzhao_kl
2021-07-21 07:14:11 +00:00
He Rengui
2f112642e6 remove useless buildrequires
Signed-off-by: He Rengui <herengui@uniontech.com>
2021-07-20 15:40:51 +08:00
3 changed files with 64 additions and 8 deletions

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@ -0,0 +1,40 @@
From e9e8dd148b9454abb5a7704d6f6249f7aa7aeded Mon Sep 17 00:00:00 2001
From: herengui <herengui@uniontech.com>
Date: Thu, 10 Mar 2022 18:14:43 +0800
Subject: [PATCH] Replace Curses mvprintw() with va_list-based equivalent
Instead of allocating a buffer for the formatted string and printing
it with mvprintw() -- which should have a "%s" format argument to guard
against '%' characters in the formatted string, hat tip Andreas Tille --,
use vw_printw() which takes a va_list so can do the formatting itself.
Signed-off-by: herengui <herengui@uniontech.com>
---
bam_tview_curses.c | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)
diff --git a/bam_tview_curses.c b/bam_tview_curses.c
index 11db0da..37fb033 100644
--- a/bam_tview_curses.c
+++ b/bam_tview_curses.c
@@ -78,15 +78,11 @@ static void curses_destroy(tview_t* base) {
*/
static void curses_mvprintw(struct AbstractTview* tv,int y ,int x,const char* fmt,...) {
- unsigned int size=tv->mcol+2;
- char* str=malloc(size);
- if(str==0) exit(EXIT_FAILURE);
va_list argptr;
va_start(argptr, fmt);
- vsnprintf(str,size, fmt, argptr);
+ if (wmove(stdscr, y, x) != ERR)
+ vw_printw(stdscr, fmt, argptr);
va_end(argptr);
- mvprintw(y,x,str);
- free(str);
}
static void curses_mvaddch(struct AbstractTview* tv,int y,int x,int ch) {
--
2.20.1

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@ -1,12 +1,14 @@
Name: samtools
Version: 1.12
Release: 2
Release: 5
Summary: Tools (written in C using htslib) for manipulating next-generation sequencing data
License: MIT and BSD
URL: http://www.htslib.org
URL: http://www.htslib.org
Source0: https://github.com/samtools/samtools/archive/%{name}-%{version}.tar.bz2
BuildRequires: gcc gdb autoconf automake make zlib-devel htslib-devel perl-Getopt-Long ncurses-devel bzip2-devel xz-devel
Patch0: Replace-Curses-mvprintw-with-va_list-based-equivalen.patch
BuildRequires: gcc autoconf automake make zlib-devel htslib-devel ncurses-devel bzip2-devel xz-devel
%description
The original samtools package has been split into three separate but tightly coordinated projects:
@ -15,16 +17,16 @@ The original samtools package has been split into three separate but tightly coo
bcftools: calling and other tools for handling VCF, BCF
See also http://github.com/samtools/
%package devel
Summary: Header files and libraries for compiling against %{name}
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
%package devel
Summary: Header files and libraries for compiling against %{name}
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
%description devel
Header files and libraries for compiling against %{name}
%prep
%setup -q -n %{name}-%{version}
%autosetup -p1
%build
autoheader
@ -57,6 +59,16 @@ install -D -p -m 0755 libbam.a %{buildroot}%{_libdir}/libbam.a
%{_libdir}/libbam.a
%changelog
* Thu Mar 10 2022 herengui <herengui@uniontech.com> - 1.12-5
- fix build error
* Tue Feb 08 2022 herengui <herengui@uniontech.com> - 1.12-4
- rebuild for htslib version updated.
* Tue Jul 20 2021 herengui <herengui@uniontech.com> - 1.12-3
- remove useless buildrequires.
- replace tab with space
* Thu Mar 25 2021 herengui <herengui@uniontech.com> - 1.12-2
- Add devel package

4
samtools.yaml Normal file
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@ -0,0 +1,4 @@
version_control: github
src_repo: samtools/samtools
tag_prefix: ^
separator: .