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!2 更新spec文件

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From: @reganhe_xx
Reviewed-by: @myeuler
Signed-off-by: @myeuler
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openeuler-ci-bot 2021-03-26 23:09:37 +08:00 committed by Gitee
commit f2d8d5bd0d
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htslib.spec
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@ -1,63 +1,80 @@
#%global debug_package %{nil}
Name: htslib
Version: 1.10.2
Release: 1
Release: 2
Summary: C library for high-throughput sequencing data formats
License: MIT and BSD
URL: http://www.htslib.org
Source0: https://github.com/samtools/htslib/archive/%{name}-%{version}.tar.gz
BuildRequires: gcc autoconf automake make curl-devel zlib-devel bzip2-devel xz-devel libxcrypt-devel openssl-devel
BuildRequires: gcc autoconf automake make curl-devel zlib-devel bzip2-devel xz-devel libxcrypt-devel openssl-devel
%description
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data,
and is the core library used by samtools and bcftools. HTSlib only depends on
zlib. It is known to be compatible with gcc, g++ and clang.
HTSlib implements a generalized BAM index, with file extension .csi (
coordinate-sorted index). The HTSlib file reader first looks for the new index
and then for the old if the new index is absent.
%package devel
Summary: libs for htslib package
Requires: %{name} = %{version}-%{release}
%description devel
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
%description devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.
%prep
%setup -q -n %{name}-%{version}/
%setup -q -n %{name}-%{version}
%build
autoheader
autoconf
%configure --prefix=%{_prefix} --libdir=%{_libdir} --enable-gcs --enable-libcurl --enable-s3
%configure --prefix=%{_prefix} \
--libdir=%{_libdir} \
--enable-plugins \
--enable-gcs \
--enable-libcurl \
--enable-s3
%make_build
# As we don't install libhts.a, the .private keywords are irrelevant.
sed -i -E '/^(Libs|Requires)\.private:/d' htslib.pc.tmp
%install
%make_install
# The dynamic libraries should have execution permissions, otherwise it cannot be referenced by other packages
find %{buildroot}/%{_libdir} -iname "*.so.*" -exec chmod +x {} \;
rm -rf %{buildroot}/%{_libdir}/libhts.a
%pre
%preun
%post
%postun
%check
%files
%license LICENSE
%doc README NEWS README.large_positions.md
%{_bindir}/*
%{_libdir}/libhts.so.*
%{_mandir}/*
%dir %{_libexecdir}/%{name}
%{_libexecdir}/%{name}/hfile_gcs.so
%{_libexecdir}/%{name}/hfile_libcurl.so
%{_libexecdir}/%{name}/hfile_s3.so
%{_libexecdir}/%{name}/hfile_s3_write.so
%{_mandir}/man1/bgzip.1*
%{_mandir}/man1/htsfile.1*
%{_mandir}/man1/tabix.1*
%{_mandir}/man5/faidx.5*
%{_mandir}/man5/sam.5*
%{_mandir}/man5/vcf.5*
%{_mandir}/man7/htslib-s3-plugin.7*
%files devel
%dir %{_includedir}/%{name}
%{_includedir}/%{name}/*
%{_libdir}/libhts.so
%{_libdir}/pkgconfig/*
%{_includedir}/*
%{_libdir}/pkgconfig/htslib.pc
%changelog
* Sun Mar 29 2020 Wei Xiong <myeuler@163.com>
* Fri Mar 26 2021 herengui <herengui@uniontech.com> - 1.10.2-2
- Add compilation parameters, update package lists
* Sun Mar 29 2020 Wei Xiong <myeuler@163.com> - 1.10.2-1
- Package init